Overview

Most proteins do not function alone, but interact to form protein complexes and networks. Understanding these networks of interacting proteins is key to understanding biological systems. Our laboratory studies protein interaction networks and how they function in disease and development. In particular we study protein networks that are important in signaling in cancer, such as the Wnt pathway.

Recent publications

  • iOmicsPASS: a novel method for integration of multi-omics data over biological networks and discovery of predictive subnetworks. 2018 (www.biorxiv.org)
  • The PTPRT pseudo-phosphatase domain is a denitrase. 2018  (www.biorxiv.org)
  • Multi-proteomic and transcriptomic analysis of oncogenic β-catenin molecular networks Journal of Proteome Research, 2018 (PubMed)
  • A Method of Integrating Spatial Proteomics and Protein-Protein Interaction Network Data Lecture Notes in Computer Science, 2017 (full text)
  • Proteomics and network analyses reveal inhibition of Akt-mTOR signaling by M. tuberculosis Mannose-capped Lipoarabinomannan, Proteomics, 2017 (PubMed)
  • Noise-processing by signaling networks. Scientific Reports, 2017 (PubMed)
  • Single-cell pluripotency regulatory networks. Proteomics, 2016 (PubMed)
  • Proteomic and bioinformatics profile of paired human alveolar macrophages and peripheral blood monocytes. Proteomics, 2015 (PubMed)
  • How do oncoprotein mutations rewire protein–protein interaction networks? Expert Review Proteomics, 2015. (pdf)
  • A protein interaction between β-catenin and Dnmt1 regulates Wnt Signaling and DNA methylation in colorectal cancer cells. Molecular Cancer Research, 2015 (PubMed|pdf)
  • Structural Proteomics: Large-scale studies. In: eLS. John Wiley & Sons Ltd, Chichester. (Jun 2015) (Paper|pdf)
  • The Wnt Signaling Network in Cancer. In Systems Biology of Cancer. Cambridge University Press (2015) (link to book)
  • Alternate wiring of a KNOXI genetic network underlies differences in leaf development of A. thaliana and C. hirsuta. Genes & development. 2015 (PubMed)
  • Regulation of protein stability of DNA methyltransferase 1 by post-translational modifications. Acta Biochim Biophys Sin, 2014 (PubMed)
  • Integrated analysis of the Wnt responsive proteome in human cells reveals diverse and cell-type specific networks. Mol Biosyst. 2014 (PubMed)
  • The CRAPome: a contaminant repository for affinity purification-mass spectrometry data. Nat Methods. 2013 (PubMed)
  • Gain of interaction with IRS1 by p110α-helical domain mutants is crucial for their oncogenic functions. Cancer Cell. 2013 (PubMed)

 

Published on  July 29th, 2018